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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srlRBacterial regulatory, arsR family protein. (259 aa)    
Predicted Functional Partners:
agaS
Putative tagatose-6-phosphate ketose/aldose isomerase.
 
    0.796
pfkB-2
pfkB: 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.714
pfkB
pfkB: 1-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.712
kbaZ
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit.
 
  
 0.712
DR95_1641
Acetyltransferase family protein.
    
   0.692
manX_2
Pts-sorbose: PTS system, mannose/fructose/sorbose, IIB component family protein.
 
    0.651
agaC
PTS system sorbose-specific iic component family protein.
 
  
 0.632
manZ
PTS system mannose/fructose/sorbose IID component family protein.
 
  
 0.585
nagA-2
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
    0.568
dhaM
PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit dhaM.
  
  
 0.483
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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