STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
agaSPutative tagatose-6-phosphate ketose/aldose isomerase. (396 aa)    
Predicted Functional Partners:
manX_1
PTS system fructose IIA component family protein.
 
 
 0.984
nagA-2
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
 
 0.970
kbaZ
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit.
 
  
 0.956
manX_2
Pts-sorbose: PTS system, mannose/fructose/sorbose, IIB component family protein.
 
  
 0.945
manZ
PTS system mannose/fructose/sorbose IID component family protein.
 
  
 0.916
agaC
PTS system sorbose-specific iic component family protein.
 
  
 0.914
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
    
 0.905
srlR
Bacterial regulatory, arsR family protein.
 
   
 0.781
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
 
 0.686
chbB
N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component.
  
     0.639
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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