STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsFType II secretion system (T2SS), F family protein. (399 aa)    
Predicted Functional Partners:
gspE
Type II/IV secretion system family protein.
 
 
 0.997
pilT
pilT_fam: twitching motility family protein.
 
  
 0.863
pilQ
Bacterial type II and III secretion system family protein.
 
 
 
 0.851
DR95_1395
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.772
pilE1
Hypothetical protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein.
 
   
 0.765
DR95_1396
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.760
comEA
Competence ComEA helix-hairpin-helix repeat region domain protein.
  
  
 0.731
DR95_2534
Putative fimbrial assembly protein.
   
 
 0.726
DR95_2535
Hypothetical protein.
   
 
 0.726
mxiD_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
  
 0.663
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.