STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proPProline/betaine transporter. (498 aa)    
Predicted Functional Partners:
phrB
FAD binding domain of DNA photolyase family protein.
       0.773
rpmE-2
L31: ribosomal protein L31.
   
    0.696
ulaA
PTS system sugar-specific permease component family protein.
   
    0.687
DR95_3038
Glycosyl transferase 2 family protein.
   
   0.634
rpmJ-2
rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.569
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
    0.554
ribE
ribE: riboflavin synthase, alpha subunit.
   
    0.541
caiT
L-carnitine/gamma-butyrobetaine antiporter; Belongs to the BCCT transporter (TC 2.A.15) family.
      
 0.494
DR95_2349
citMHS: citrate transporter family protein.
  
    0.421
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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