Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
emrDMultidrug resistance protein D. (394 aa)    
Predicted Functional Partners:
uspB
Universal stress protein B.
  
     0.540
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
     0.494
DR95_3288
Hypothetical protein.
  
     0.469
hsrA_1
Sugar (and other) transporter family protein.
  
   
 0.447
panZ
Hypothetical protein; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
  
     0.447
yjdC
HTH-type transcriptional regulator yjdC.
  
     0.447
ampH
Beta-lactamase family protein.
  
  
 0.447
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.405
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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