Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gabRAminotransferase class I and II family protein. (495 aa)    
Predicted Functional Partners:
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.847
sinR
Helix-turn-helix family protein.
 
  
 0.676
DR95_3119
Acetyltransferase domain protein.
 
   
 0.610
ripA_1
araC-like ligand binding domain protein.
  
  
 0.562
DR95_165
Helix-turn-helix domain protein.
  
  
 0.562
chbR
HTH-type transcriptional regulator ChbR.
  
  
 0.562
bglF
PTS system beta-glucoside-specific EIIBCA component.
  
  
 0.509
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
  
  
 0.509
ttrS
His Kinase A domain protein.
  
  
 0.483
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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