STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdZInner membrane protein ycdZ. (154 aa)    
Predicted Functional Partners:
DR95_850
ASCH domain protein; Belongs to the UPF0267 family.
  
     0.765
DR95_668
Hypothetical protein.
  
     0.669
dcuD_3
dcuC: transporter, anaerobic C4-dicarboxylate uptake C family protein.
  
     0.651
DR95_2971
Hypothetical protein.
  
     0.639
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.621
tyrP
araaP: aromatic amino acid transport family protein.
  
     0.608
chiP
Outer membrane porin, OprD family protein.
  
     0.595
yciN
Protein yciN.
  
     0.591
DR95_3058
Hypothetical protein.
  
     0.576
hcr
NADH oxidoreductase hcr.
  
     0.573
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.