STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
benM_2Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
DR95_1341
Bacterial regulatory helix-turn-helix, lysR family protein.
  
     0.768
cysL_1
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.762
allS_4
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.715
lysR
Transcriptional activator protein lysR; Belongs to the LysR transcriptional regulatory family.
  
     0.698
cynR_1
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.669
dsdC
dsdC: D-serine deaminase transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.648
dmlR_6
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
    0.639
DR95_3142
Carbon-nitrogen hydrolase family protein.
 
    0.527
DR95_3323
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.486
soxS_2
Cupin domain protein.
  
    0.414
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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