STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR95_3169Major Facilitator Superfamily protein. (510 aa)    
Predicted Functional Partners:
DR95_3170
hlyD secretion family protein.
 
 
 0.965
emrA_1
8a0101: efflux pump membrane family protein.
 
 
 0.817
hsrA_1
Sugar (and other) transporter family protein.
  
     0.692
DR95_877
RND_mfp: efflux transporter, RND family, MFP subunit.
  
 
 0.654
DR95_3171
Bacterial regulatory s, tetR family protein.
 
     0.601
DR95_2213
doxX-like family protein.
  
     0.561
smvA
Sugar (and other) transporter family protein.
  
     0.560
DR95_2791
tape_meas_lam_C: phage tail tape measure protein, lambda family.
  
     0.541
DR95_874
Major Facilitator Superfamily protein.
  
     0.538
DR95_879
Outer membrane efflux family protein.
 
  
 0.530
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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