Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ampHBeta-lactamase family protein. (348 aa)    
Predicted Functional Partners:
DR95_1084
yniB-like family protein.
  
     0.653
bssS
bssS family protein.
  
     0.644
DR95_906
Hypothetical protein.
  
     0.617
DR95_96
sseB C-terminal domain protein.
  
     0.586
ymoA
Modulating protein ymoA.
  
     0.573
yceB
Hypothetical protein.
  
     0.532
DR95_2706
Peptidase M16 inactive domain protein.
  
    0.521
ampD
1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.
      
 0.515
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
     
 0.510
DR95_2707
Beta-lactamase family protein.
  
     0.504
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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