STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cueRcueR: Cu(I)-responsive transcriptional regulator. (134 aa)    
Predicted Functional Partners:
arcB
Aerobic respiration control sensor protein ArcB.
   
 
 0.818
copA
ATPase-IB1_Cu: copper-translocating P-type ATPase.
  
  
 0.777
rpoD
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
 
 
 0.760
cueO
Blue copper oxidase CueO.
 
  
 0.728
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.666
cadA
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
 
  
 0.641
soxR
soxR: redox-sensitive transcriptional activator SoxR.
  
   
 0.557
gst
Hypothetical protein; Glutathione S-transferase, N-terminal domain protein.
  
   
 0.539
nudE
ADP compounds hydrolase nudE.
   
    0.533
arsB
Arsenical pump membrane protein.
      
 0.533
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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