STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raiA-2Ribosome-associated inhibitor A. (111 aa)    
Predicted Functional Partners:
rmf
Ribosome modulation factor domain protein; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
 
 0.935
rpsP
S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.854
rpsU
S21p: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.795
rpmF
rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 
 0.790
rpmA
L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.787
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.786
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.782
rpmH
rpmH_bact: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.782
rpmC
L29: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.779
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.777
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.