Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DR95_411thiS family protein. (188 aa)    
Predicted Functional Partners:
DR95_410
phage_tail_L: phage minor tail protein L.
 
   0.989
DR95_412
Phage tail family protein.
 
   0.989
DR95_409
Phage minor tail family protein.
  
   0.924
DR95_1149
Fibronectin type III domain protein.
 
   0.903
DR95_2796
Fibronectin type III domain protein.
 
   0.897
DR95_2791
tape_meas_lam_C: phage tail tape measure protein, lambda family.
 
   0.895
DR95_1153
tape_meas_lam_C: phage tail tape measure protein, lambda family.
 
   0.893
DR95_406
Tape_meas_nterm: tape measure domain protein.
 
   0.804
DR95_1158
Bacteriophage HK97-gp10, tail-component family protein.
 
    0.730
DR95_413
Hypothetical protein.
       0.723
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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