Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
baeSHAMP domain protein. (458 aa)    
Predicted Functional Partners:
baeR
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 0.996
mdtC
acrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtC subfamily.
  
  
 0.859
mdtB
acrB/AcrD/AcrF family protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtB subfamily.
  
  
 0.859
kdpE
KDP operon transcriptional regulatory protein kdpE.
 
 
 0.846
cpxP
LTXXQ motif family protein.
  
  
 0.838
mdtA_1
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.821
arcB
Aerobic respiration control sensor protein ArcB.
  
 
 0.761
cpxR
Transcriptional regulatory protein CpxR.
 
 
 0.724
DR95_1130
Putative transcriptional regulatory protein yedW.
 
 
 0.674
rssB
Swarming motility regulation protein rssB.
 
 
 0.666
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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