Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DR95_493Hypothetical protein. (289 aa)    
Predicted Functional Partners:
DR95_494
Hypothetical protein.
       0.727
DR95_496
tonB dependent receptor family protein.
 
  
 0.541
DR95_2798
Helix-turn-helix family protein.
  
     0.534
maeB
NADP-dependent malic enzyme.
       0.519
DR95_2254
Hypothetical protein.
  
     0.503
hpmA
Hemolysin.
 
     0.501
DR95_3118
Sel1 repeat family protein.
  
     0.494
hmuV
Hemin import ATP-binding protein HmuV; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
  
  
 0.488
DR95_2256
Hypothetical protein.
  
     0.421
DR95_1883
Bacterial Ig-like domain family protein.
  
     0.418
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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