STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recEPutative exodeoxyribonuclease VIII. (573 aa)    
Predicted Functional Partners:
DR95_513
recT family protein.
 
     0.909
DR95_515
Hypothetical protein.
       0.773
DR95_36
Phage Tail Collar domain protein.
  
     0.714
DR95_32
tape_meas_TP901: phage tail tape measure protein, TP901 family, core region.
  
     0.648
DR95_19
major_capsid_P2: phage major capsid protein, P2 family.
  
     0.637
DR95_20
Phage small terminase subunit.
  
     0.624
DR95_1743
iclR helix-turn-helix domain protein.
  
     0.572
ttrC
Polysulfide reductase, NrfD family protein.
  
     0.562
DR95_16
portal_PBSX: phage portal protein, PBSX family.
  
     0.558
DR95_18
Phage capsid scaffolding (GPO) serine peptidase family protein.
  
     0.544
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.