STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR95_623Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family. (287 aa)    
Predicted Functional Partners:
yjcF
Acetyltransferase family protein.
  
     0.535
DR95_2847
Autotransporter beta-domain protein.
  
     0.525
prtA-2
Secreted protease A.
  
     0.523
hpmA
Hemolysin.
  
    0.517
DR95_1903
rTX-family protein.
  
     0.509
DR95_3673
Bacterial Ig-like domain family protein.
  
    0.507
DR95_1521
Hypothetical protein; adhes_NPXG: filamentous hemagglutinin family N-terminal domain protein.
  
    0.488
mrkD
Fimbrial family protein.
  
     0.459
invF
Helix-turn-helix domain protein.
  
    0.453
DR95_3279
Major Facilitator Superfamily protein.
  
     0.453
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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