Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR95_2482 | helD | DR95_2482 | DR95_1358 | Hypothetical protein; Belongs to the UPF0325 family. | Helicase IV. | 0.457 |
| DR95_2482 | hns | DR95_2482 | DR95_630 | Hypothetical protein; Belongs to the UPF0325 family. | DNA-binding protein H-NS; A DNA-binding protein implicated in transcriptional repression and chromosome organization and compaction. Binds nucleation sites in AT-rich DNA and bridges them, forming higher-order nucleoprotein complexes and condensing the chromosome. As many horizontally transferred genes are AT-rich, it plays a central role in silencing foreign genes. A subset of genes are repressed by H-NS in association with other proteins (By similarity). | 0.638 |
| DR95_2482 | lpp | DR95_2482 | DR95_1027 | Hypothetical protein; Belongs to the UPF0325 family. | Lipoleucine-zipper family protein. | 0.577 |
| DR95_2482 | yciS | DR95_2482 | DR95_936 | Hypothetical protein; Belongs to the UPF0325 family. | Inner membrane protein yciS; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. | 0.468 |
| DR95_2482 | yhcB | DR95_2482 | DR95_1968 | Hypothetical protein; Belongs to the UPF0325 family. | Putative cytochrome d ubiquinol oxidase subunit 3. | 0.445 |
| DR95_2482 | ymoA | DR95_2482 | DR95_1792 | Hypothetical protein; Belongs to the UPF0325 family. | Modulating protein ymoA. | 0.528 |
| DR95_2482 | zapB | DR95_2482 | DR95_3053 | Hypothetical protein; Belongs to the UPF0325 family. | Cell division protein ZapB; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA. | 0.509 |
| arcB | helD | DR95_1958 | DR95_1358 | Aerobic respiration control sensor protein ArcB. | Helicase IV. | 0.453 |
| arcB | hns | DR95_1958 | DR95_630 | Aerobic respiration control sensor protein ArcB. | DNA-binding protein H-NS; A DNA-binding protein implicated in transcriptional repression and chromosome organization and compaction. Binds nucleation sites in AT-rich DNA and bridges them, forming higher-order nucleoprotein complexes and condensing the chromosome. As many horizontally transferred genes are AT-rich, it plays a central role in silencing foreign genes. A subset of genes are repressed by H-NS in association with other proteins (By similarity). | 0.601 |
| arcB | yciS | DR95_1958 | DR95_936 | Aerobic respiration control sensor protein ArcB. | Inner membrane protein yciS; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. | 0.570 |
| dsbA | helD | DR95_2721 | DR95_1358 | Thiol:disulfide interchange protein DsbA. | Helicase IV. | 0.557 |
| dsbA | hns | DR95_2721 | DR95_630 | Thiol:disulfide interchange protein DsbA. | DNA-binding protein H-NS; A DNA-binding protein implicated in transcriptional repression and chromosome organization and compaction. Binds nucleation sites in AT-rich DNA and bridges them, forming higher-order nucleoprotein complexes and condensing the chromosome. As many horizontally transferred genes are AT-rich, it plays a central role in silencing foreign genes. A subset of genes are repressed by H-NS in association with other proteins (By similarity). | 0.592 |
| dsbA | yhcB | DR95_2721 | DR95_1968 | Thiol:disulfide interchange protein DsbA. | Putative cytochrome d ubiquinol oxidase subunit 3. | 0.676 |
| dsbA | zapB | DR95_2721 | DR95_3053 | Thiol:disulfide interchange protein DsbA. | Cell division protein ZapB; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA. | 0.707 |
| helD | DR95_2482 | DR95_1358 | DR95_2482 | Helicase IV. | Hypothetical protein; Belongs to the UPF0325 family. | 0.457 |
| helD | arcB | DR95_1358 | DR95_1958 | Helicase IV. | Aerobic respiration control sensor protein ArcB. | 0.453 |
| helD | dsbA | DR95_1358 | DR95_2721 | Helicase IV. | Thiol:disulfide interchange protein DsbA. | 0.557 |
| helD | hns | DR95_1358 | DR95_630 | Helicase IV. | DNA-binding protein H-NS; A DNA-binding protein implicated in transcriptional repression and chromosome organization and compaction. Binds nucleation sites in AT-rich DNA and bridges them, forming higher-order nucleoprotein complexes and condensing the chromosome. As many horizontally transferred genes are AT-rich, it plays a central role in silencing foreign genes. A subset of genes are repressed by H-NS in association with other proteins (By similarity). | 0.572 |
| helD | yhcB | DR95_1358 | DR95_1968 | Helicase IV. | Putative cytochrome d ubiquinol oxidase subunit 3. | 0.700 |
| helD | ymoA | DR95_1358 | DR95_1792 | Helicase IV. | Modulating protein ymoA. | 0.689 |
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