Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppA3Periplasmic oligopeptide-binding protein. (545 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transport system permease protein oppB.
 
 0.991
oppC
Oligopeptide transport system permease protein oppC.
 
 
 0.986
oppD_2
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 
 0.984
oppF_1
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 
 0.984
oppA3-2
Periplasmic oligopeptide-binding protein.
 
  
 
0.943
mppA
Periplasmic murein peptide-binding protein.
 
  
 
0.909
dppB
Binding--dependent transport system inner membrane component family protein.
 
 
 0.693
ddpB
Binding--dependent transport system inner membrane component family protein.
 
 
 0.666
gsiC
Binding--dependent transport system inner membrane component family protein.
 
 
 0.640
nikB
Binding--dependent transport system inner membrane component family protein.
 
 
 0.636
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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