Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cydA_1Bacterial Cytochrome Ubiquinol Oxidase family protein. (444 aa)    
Predicted Functional Partners:
cydB-2
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.999
cydB
cydB: cytochrome d ubiquinol oxidase, subunit II.
 0.997
ybgT
cyd_oper_ybgT: cyd operon protein YbgT.
  
 0.979
DR95_675
Hypothetical protein.
  
    0.919
cydA
Cytochrome d ubiquinol oxidase subunit 1.
  
  
 
0.917
cydD
cydD: thiol reductant ABC exporter, CydD subunit.
 
  
 0.820
cydC
cydC: thiol reductant ABC exporter, CydC subunit.
 
  
 0.683
DR95_1543
cyd_oper_ybgE: cyd operon protein YbgE.
  
    0.642
cyoD
cyoD: cytochrome o ubiquinol oxidase subunit IV.
     
 0.597
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 
 0.568
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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