STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lutRBacterial regulatory s, gntR family protein. (237 aa)    
Predicted Functional Partners:
siaT_1
TRAP_fused: TRAP transporter, 4TM/12TM fusion family protein.
 
     0.843
DR95_688
TRAP_TAXI: TRAP transporter solute receptor, TAXI family protein.
 
     0.835
lhgO
FAD dependent oxidoreductase family protein.
 
  
 0.740
pdhR_2
Bacterial regulatory s, gntR family protein.
 
     0.722
ydfH
Bacterial regulatory s, gntR family protein.
 
  
 0.712
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.550
yidP
Hypothetical protein.
  
    0.533
glcA
Transporter, lactate permease family protein; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.519
DR95_2078
Dihydroorotate dehydrogenase family protein.
 
  
 0.482
iclR
Acetate operon repressor.
 
  
 0.426
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.