STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yecMProtein yecM. (184 aa)    
Predicted Functional Partners:
DR95_3299
Hypothetical protein; Opacity-associated A N-terminal motif family protein.
  
    0.764
uspB
Universal stress protein B.
  
     0.755
DR95_1543
cyd_oper_ybgE: cyd operon protein YbgE.
  
     0.754
DR95_188
Hypothetical protein; Belongs to the UPF0304 family.
  
     0.733
DR95_2705
HAMP domain protein.
  
     0.733
nlpB
Lipoprotein 34; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.733
DR95_2325
Bacterial virulence factor hemolysin family protein.
  
     0.732
DR95_1435
Bacterial sensory transduction regulator family protein.
  
     0.725
wzzE
Lipopolysaccharide biosynthesis protein wzzE; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.722
cpxP
LTXXQ motif family protein.
  
     0.720
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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