Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
glrKPutative sensor-like histidine kinase yfhK. (479 aa)    
Predicted Functional Partners:
qseF_2
AAA domain family protein.
 
 0.997
qseG
yfhG lipofamily protein.
 
 
 
 0.982
arcB
Aerobic respiration control sensor protein ArcB.
  
 
 0.930
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.903
phoB
phoB: phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.683
phoP
Transcriptional regulatory protein phoP.
 
 
 0.682
papA
Pap fimbrial major pilin protein.
  
     0.672
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
  
 0.664
rcsD
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
 0.660
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.650
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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