STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgIPutative arginine/ornithine antiporter. (464 aa)    
Predicted Functional Partners:
malL
Alpha amylase, catalytic domain protein.
   
 0.877
arcC
arcC: carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.596
arcC-2
arcC: carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.535
trpC
Indole-3-glycerol phosphate synthase family protein; Belongs to the TrpC family.
    
 
 0.512
arcC2_1
Amino acid kinase family protein; Belongs to the carbamate kinase family.
 
  
 0.481
pheA
P-protein.
   
 
 0.458
iciA
Chromosome initiation inhibitor; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family.
  
   
 0.457
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.444
gltB
Glutamine amidotransferases class-II family protein.
  
  
 0.429
ydgH
Protein ydgH.
       0.418
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.