Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ydgIPutative arginine/ornithine antiporter. (464 aa)    
Predicted Functional Partners:
malL
Alpha amylase, catalytic domain protein.
   
 0.612
arcC
arcC: carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.591
speF
Hypothetical protein; orn/Lys/Arg decarboxylase, C-terminal domain protein.
  
  
 0.539
arcC-2
arcC: carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.529
motB
Motility protein B.
      
 0.494
exbB
exbB: tonB-system energizer ExbB.
      
 0.482
arcC2_1
Amino acid kinase family protein; Belongs to the carbamate kinase family.
 
  
 0.474
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.446
ydgH
Protein ydgH.
       0.418
argF-2
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.413
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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