STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
qseF_2AAA domain family protein. (445 aa)    
Predicted Functional Partners:
glrK
Putative sensor-like histidine kinase yfhK.
 
 
 0.994
qseG
yfhG lipofamily protein.
  
  
 0.782
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.781
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.764
glnB
Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.748
arcB
Aerobic respiration control sensor protein ArcB.
  
 
 0.654
glnL
Nitrogen regulation protein NR.
 
 0.646
fliH
Flagellar assembly FliH family protein.
 
  
 0.646
cheA
Chemotaxis protein CheA.
  
 
 0.636
ttrS
His Kinase A domain protein.
 
 
 0.621
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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