STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR95_874Major Facilitator Superfamily protein. (464 aa)    
Predicted Functional Partners:
DR95_873
Helix-turn-helix domain protein.
 
     0.668
emrA_1
8a0101: efflux pump membrane family protein.
 
 
 0.647
DR95_3170
hlyD secretion family protein.
 
 
 0.626
ydhC_2
Sugar (and other) transporter family protein.
  
     0.611
DR95_875
Hypothetical protein.
       0.596
DR95_3169
Major Facilitator Superfamily protein.
  
     0.538
bcr
Bicyclomycin resistance protein.
  
   
 0.537
ydhC_3
efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily protein.
  
   
 0.462
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.