Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DR95_878Aluminum activated malate transporter family protein. (617 aa)    
Predicted Functional Partners:
DR95_877
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.955
DR95_879
Outer membrane efflux family protein.
 
  
 0.950
nifU
nifU-like protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.703
DR95_2804
Secretory lipase family protein.
 
     0.600
DR95_2213
doxX-like family protein.
  
     0.585
fimA_4
Fimbrial family protein.
  
     0.580
DR95_2333
Acetyltransferase domain protein.
  
     0.572
DR95_3673
Bacterial Ig-like domain family protein.
  
     0.571
DR95_2964
Putative exported FKBP-type peptidyl-prolyl cis-trans isomerase.
  
     0.556
DR95_2791
tape_meas_lam_C: phage tail tape measure protein, lambda family.
  
    0.548
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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