Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
xylAxylose_isom_A: xylose isomerase; Belongs to the xylose isomerase family. (438 aa)    
Predicted Functional Partners:
xylB
xylB: xylulokinase.
 
 
 0.995
kdgK_4
pfkB carbohydrate kinase family protein.
     
 0.912
xylR
Helix-turn-helix domain protein.
 
   
 0.877
nhaC
antiport_nhaC: Na+/H+ antiporter NhaC.
       0.781
patB_1
C_S_lyase_PatB: C-S lyase family protein.
       0.781
glmS
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
      
 0.666
galM
Galactose mutarotase; Converts alpha-aldose to the beta-anomer.
 
  
 0.597
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
      
 0.444
fggy
FGGY carbohydrate kinase domain-containing protein.
  
   
 0.415
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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