STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAxylose_isom_A: xylose isomerase; Belongs to the xylose isomerase family. (438 aa)    
Predicted Functional Partners:
xylB
xylB: xylulokinase.
 
 
 0.967
kdgK_4
pfkB carbohydrate kinase family protein.
     
 0.910
xylR
Helix-turn-helix domain protein.
 
   
 0.845
nhaC
antiport_nhaC: Na+/H+ antiporter NhaC.
       0.787
patB_1
C_S_lyase_PatB: C-S lyase family protein.
       0.786
glmS
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
      
 0.696
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
      
 0.644
galM
Galactose mutarotase; Converts alpha-aldose to the beta-anomer.
 
  
 0.605
rpoS
RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
      
 0.473
exuR
Bacterial regulatory s, lacI family protein.
     
 0.459
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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