STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nhaCantiport_nhaC: Na+/H+ antiporter NhaC. (491 aa)    
Predicted Functional Partners:
patB_1
C_S_lyase_PatB: C-S lyase family protein.
 
    0.835
xylA
xylose_isom_A: xylose isomerase; Belongs to the xylose isomerase family.
       0.787
alaA
Hypothetical protein.
   
  
 0.707
DR95_3172
C4-dicarboxylate anaerobic carrier family protein.
 
     0.578
xylB
xylB: xylulokinase.
       0.577
yhjD
Inner membrane protein YhjD.
   
  
 0.570
xylR
Helix-turn-helix domain protein.
       0.514
DR95_3545
C4-dicarboxylate anaerobic carrier family protein.
 
     0.480
arcB
Aerobic respiration control sensor protein ArcB.
     
 0.478
DR95_2571
Sss: transporter, solute:sodium symporter family protein.
  
  
 0.469
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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