Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
osmY_1BON domain protein. (104 aa)    
Predicted Functional Partners:
DR95_3632
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
 
    0.830
fbaB
Fructose-bisphosphate aldolase class 1.
   
    0.655
yqjC
Protein yqjC.
  
    0.600
DR95_1925
Hypothetical protein.
  
    0.529
DR95_2079
Hypothetical protein.
  
    0.503
skp
Chaperone protein skp; Belongs to the skp family.
  
  
 0.496
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.489
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.489
osmY_3
BON domain protein.
 
    0.456
trpC
Indole-3-glycerol phosphate synthase family protein; Belongs to the TrpC family.
       0.444
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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