Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pspBphageshock_pspB: phage shock protein B. (76 aa)    
Predicted Functional Partners:
pspC
phageshock_pspC: phage shock protein C.
 
 
 0.999
pspA
phageshock_pspA: phage shock protein A.
 
 
 0.999
arcB
Aerobic respiration control sensor protein ArcB.
  
 
 
 0.891
DR95_187
Hypothetical protein.
  
     0.704
DR95_988
Hypothetical protein.
 
   
 0.701
syd
Protein syd; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.688
DR95_987
Hypothetical protein.
     
 0.634
yihI
Der GTPase activator family protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.594
pspF
phageshock_pspF: psp operon transcriptional activator.
 
     0.589
yejL
Hypothetical protein; Belongs to the UPF0352 family.
  
     0.588
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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