STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ykgMPutative ribosomal protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure. (87 aa)    
Predicted Functional Partners:
yodA
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; 12480884, 12909634, 9579078.
  
  
 0.987
rpmB
50S ribosomal subunit protein L28; Function experimentally demonstrated in the studied species; structure; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.963
rpsP
30S ribosomal subunit protein S16; Function experimentally demonstrated in the studied species; structure; Belongs to the bacterial ribosomal protein bS16 family.
 
 
 0.929
rpmG
50S ribosomal subunit protein L33; Function experimentally demonstrated in the studied species; structure; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.925
rpsT
30S ribosomal subunit protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.917
rplU
50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.917
rplS
50S ribosomal subunit protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.916
rpsO
30S ribosomal subunit protein S15; Function experimentally demonstrated in the studied species; structure.
   
 
 0.915
rpmA
50S ribosomal subunit protein L27; Function experimentally demonstrated in the studied species; structure; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.912
rplM
50S ribosomal subunit protein L13; Function experimentally demonstrated in the studied species; structure.
  
 
 0.912
Your Current Organism:
Escherichia coli IAI1
NCBI taxonomy Id: 585034
Other names: E. coli IAI1, Escherichia coli str. IAI1, Escherichia coli strain IAI1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.