STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yliCPutative peptide transporter permease subunit: membrane component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (306 aa)    
Predicted Functional Partners:
yliB
Putative peptide transporter subunit: periplasmic-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 0.999
yliD
Putative peptide transporter permease subunit: membrane component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.999
yliA
Putative peptide transport fused subunits of ABC superfamily: ATP-binding components; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the ABC transporter superfamily.
 
 0.998
iaaA
Isoaspartyl dipeptidase with L-asparaginase activity; Function experimentally demonstrated in the studied species; enzyme.
  
  
 0.863
dppC
Dipeptide transporter; Function experimentally demonstrated in the studied species; transporter.
  
 0.859
oppC
Oligopeptide transporter subunit; Function experimentally demonstrated in the studied species; transporter.
  
 0.856
ddpC
D-ala-D-ala transporter subunit; Function experimentally demonstrated in the studied species; transporter.
  
 0.856
nikC
Nickel transporter subunit; Function experimentally demonstrated in the studied species; transporter.
  
 0.855
ddpD
D-ala-D-ala transporter subunit; Function experimentally demonstrated in the studied species; transporter; Belongs to the ABC transporter superfamily.
 
 
 0.851
dppD
Dipeptide transporter; Function experimentally demonstrated in the studied species; transporter; Belongs to the ABC transporter superfamily.
 
 0.851
Your Current Organism:
Escherichia coli IAI1
NCBI taxonomy Id: 585034
Other names: E. coli IAI1, Escherichia coli str. IAI1, Escherichia coli strain IAI1
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