STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yddBPutative porin protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (790 aa)    
Predicted Functional Partners:
pqqL
Putative membrane-associated peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.983
yddA
Putative multidrug transporter fused subunits of ABC superfamily transporter: permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.979
yeeJ
Fragment of putative invasin (part 1); Gene remnant; putative membrane component.
  
 
 
 0.837
yghJ
Inner membrane lipoprotein; Function of strongly homologous gene; lipoprotein.
  
     0.772
yhhZ
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.765
yihF
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.765
ygeH
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.762
yraH
Putative fimbrial-like adhesin protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.761
ygiL
Putative fimbrial-like adhesin protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.758
yjcQ
Multidrug efflux system component; Function of strongly homologous gene; transporter.
  
     0.757
Your Current Organism:
Escherichia coli IAI1
NCBI taxonomy Id: 585034
Other names: E. coli IAI1, Escherichia coli str. IAI1, Escherichia coli strain IAI1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.