STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhWConserved hypothetical protein; Homologs of previously reported genes of unknown function. (215 aa)    
Predicted Functional Partners:
ydhV
Putative ferredoxin:oxidoreductase subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.992
ydhT
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.914
ydhU
Putative cytochrome b subunit of a reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
    0.897
ydhY
Putative 4Fe-4S ferridoxin-type subunit of oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
    0.891
ydhX
Putative 4Fe-4S ferridoxin-type subunit of oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
    0.852
hdeD
Acid-resistance membrane protein; Function experimentally demonstrated in the studied species; putative membrane component.
  
     0.767
fepE
Regulator of length of O-antigen component of lipopolysaccharide chains; Function experimentally demonstrated in the studied species; regulator.
  
     0.731
rhsC
rhsC element core protein RshC; Function of strongly homologous gene; extrachromosomal origin.
  
     0.716
rhsD
rhsD element protein; Function of strongly homologous gene; extrachromosomal origin.
  
     0.701
rhsD-2
Fragment of conserved hypothetical protein VgrE (Part 2); Gene remnant.
  
     0.694
Your Current Organism:
Escherichia coli IAI1
NCBI taxonomy Id: 585034
Other names: E. coli IAI1, Escherichia coli str. IAI1, Escherichia coli strain IAI1
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