STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiVPutative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (160 aa)    
Predicted Functional Partners:
ygiW
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.672
yebB
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.617
yjfM
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.590
yfbM
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.485
ybcH
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.463
ynbD
Putative membrane associated phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.457
nfrB
Bacteriophage N4 receptor, inner membrane subunit; Function experimentally demonstrated in the studied species; membrane component.
  
     0.454
yhgE
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component.
  
     0.435
qseB
DNA-binding response regulator in two-component regulatory system with QseC; Function experimentally demonstrated in the studied species; regulator.
  
    0.430
qseC
Sensory histidine kinase in two-component regulatory system with QseB; Function experimentally demonstrated in the studied species; regulator.
     
 0.428
Your Current Organism:
Escherichia coli IAI1
NCBI taxonomy Id: 585034
Other names: E. coli IAI1, Escherichia coli str. IAI1, Escherichia coli strain IAI1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.