STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcM-2Putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (398 aa)    
Predicted Functional Partners:
ytfA
Fragment of putative transcriptional regulator (partial); Gene remnant; putative regulator.
       0.773
CAR13335.1
Transposase, IS200, part of IS605 with following ORF; Function of strongly homologous gene; putative enzyme.
 
    0.735
CAR13504.1
Conserved hypothetical protein, putative transposase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
   0.548
ruvC
Component of RuvABC resolvasome, endonuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
      
 0.533
yraQ
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
      
 0.424
Your Current Organism:
Escherichia coli UMN026
NCBI taxonomy Id: 585056
Other names: E. coli UMN026
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.