STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sseBRhodanase-like enzyme, sulfur transfer from thiosulfate; Function experimentally demonstrated in the studied species; enzyme. (258 aa)    
Predicted Functional Partners:
pepB
Aminopeptidase B; Probably plays an important role in intracellular peptide degradation.
  
  
 0.792
yebY
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.771
yqjB
Conserved hypothetical protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
     0.770
aaeX
Membrane protein of efflux system; Function experimentally demonstrated in the studied species; transporter; Belongs to the AaeX family.
  
     0.769
ybaJ
Fragment of multidrug efflux system protein (part 2); Gene remnant; transporter.
  
     0.767
ompX
Outer membrane protein; Function experimentally demonstrated in the studied species; membrane component.
  
     0.767
tus
Inhibitor of replication at Ter, DNA-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.766
ycfL
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.766
spy
Envelope stress induced periplasmic protein; Function experimentally demonstrated in the studied species; cell process.
  
     0.765
osmE
DNA-binding transcriptional activator; Function experimentally demonstrated in the studied species; regulator.
  
     0.765
Your Current Organism:
Escherichia coli IAI39
NCBI taxonomy Id: 585057
Other names: E. coli IAI39
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