STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhfXPutative amino acid racemase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (387 aa)    
Predicted Functional Partners:
yhfT
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component.
 
  
 0.990
yhfW
Putative mutase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.988
yhfS
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.986
php
Putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.955
yhfU
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.950
yhfZ
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.896
yhfY
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.586
CAR18951.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; extrachromosomal origin.
  
     0.436
ymfQ
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; extrachromosomal origin.
  
     0.431
Your Current Organism:
Escherichia coli IAI39
NCBI taxonomy Id: 585057
Other names: E. coli IAI39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.