STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKH_051390U4/U6.U5 small nuclear ribonucleoprotein, putative. (408 aa)    
Predicted Functional Partners:
PKH_141620
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger protein, putative.
   
 0.949
PKH_081660
U4/U6.U5 tri-snRNP-associated protein 1, putative.
    
 0.883
PKH_130810
U6 snRNA-associated Sm-like protein LSm7, putative.
    
 0.852
PKH_120370
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.850
PKH_050820
U5 small nuclear ribonucleoprotein 40 kDa protein, putative.
   
  0.848
LSM5
U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.
   
  0.834
PKH_140820
U4/U6 small nuclear ribonucleoprotein PRP3, putative.
   
 0.817
PKH_050870
Small nuclear ribonucleoprotein G.
   
 0.814
PKH_070720
Small nuclear ribonucleoprotein Sm D3.
   
 0.807
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.806
Your Current Organism:
Plasmodium knowlesi
NCBI taxonomy Id: 5851
Other names: P. knowlesi strain H, Plasmodium knowlesi (STRAIN H), Plasmodium knowlesi H, Plasmodium knowlesi Malayan H, Plasmodium knowlesi strain H
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