STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKH_061430Transcription elongation factor SPT4, putative. (131 aa)    
Predicted Functional Partners:
PKH_061170
DNA-directed RNA polymerase II subunit RPB7, putative.
   
 0.999
PKH_072020
DNA-directed RNA polymerase II subunit RPB3, putative.
   
 0.999
PKH_113830
Transcription elongation factor SPT5.
    
 0.999
PKH_040430
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.999
PKH_140340
DNA-directed RNA polymerase II subunit RPB11, putative.
   
 0.998
PKH_041430
DNA-directed RNA polymerase I subunit, putative.
   
 0.998
PKH_020320
DNA-directed RNA polymerase II subunit RPB9, putative.
   
 0.998
PKH_110590
DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative.
   
 0.998
PKH_010620
DNA-directed RNA polymerases I, II, and III subunit RPABC5, putative.
   
 0.997
PKH_121180
DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative.
   
 0.997
Your Current Organism:
Plasmodium knowlesi
NCBI taxonomy Id: 5851
Other names: P. knowlesi strain H, Plasmodium knowlesi (STRAIN H), Plasmodium knowlesi H, Plasmodium knowlesi Malayan H, Plasmodium knowlesi strain H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.