Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEN95166.1Alanine racemase; COG1609 Transcriptional regulators. (339 aa)    
Predicted Functional Partners:
AEN97041.1
COG0067 Glutamate synthase domain 1.
    
 
 0.797
AEN98301.1
COG1609 Transcriptional regulators.
  
     0.712
AEN95167.1
ABC-type maltodextrin transport system, maltodextrin-binding periplasmic component; COG2182 Maltose-binding periplasmic proteins/domains.
 
    0.611
AEN95168.1
ABC sugar transporter, inner membrane subunit; COG1175 ABC-type sugar transport systems, permease components.
 
     0.535
AEN95170.1
Neopullulanase; COG0366 Glycosidases.
 
  
 0.531
AEN95169.1
COG0395 ABC-type sugar transport system, permease component.
 
     0.482
AEN97662.1
Alpha-amylase; COG0366 Glycosidases.
 
  
 0.444
AEN98306.1
PTS system, fructose-specific, IIABC component; COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type).
     
 0.415
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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