Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEN95220.1Hypothetical protein; COG0679 Predicted permeases. (307 aa)    
Predicted Functional Partners:
AEN97031.1
Malate dehydrogenase (oxaloacetate-decarboxylating); COG0281 Malic enzyme.
  
  
 0.792
AEN95219.1
Hypothetical protein; COG1802 Transcriptional regulators.
 
     0.759
AEN95221.1
Glycoside hydrolase family protein; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
       0.510
AEN95222.1
Hypothetical protein.
       0.510
AEN95218.1
GGDEF family protein; COG2199 FOG: GGDEF domain.
       0.408
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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