Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN95228.1ABC transporter-like protein; COG1131 ABC-type multidrug transport system, ATPase component. (313 aa)    
Predicted Functional Partners:
AEN95226.1
Hypothetical protein; COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.968
AEN95227.1
ABC-2 type transporter; COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.966
AEN95229.1
COG4585 Signal transduction histidine kinase.
 
   
 0.871
AEN95230.1
Hypothetical protein; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
    0.839
AEN96470.1
Hypothetical protein; COG1725 Predicted transcriptional regulators.
  
    0.497
AEN96966.1
COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.453
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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