Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN95382.1COG1309 Transcriptional regulator. (190 aa)    
Predicted Functional Partners:
AEN95659.1
Hypothetical protein; COG1309 Transcriptional regulator.
  
     0.732
AEN95380.1
Hypothetical protein.
       0.658
AEN95381.1
COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding).
       0.658
AEN95602.1
COG4716 Myosin-crossreactive antigen.
 
     0.580
AEN95379.1
PAS/PAC sensor hybrid histidine kinase; COG0784 FOG: CheY-like receiver.
     
 0.456
AEN97955.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
  
 0.418
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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