Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN95447.1Hypothetical protein. (114 aa)    
Predicted Functional Partners:
AEN95446.1
Site-specific recombinase, resolvase family protein; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
     0.812
AEN95453.1
Hypothetical protein.
 
     0.646
AEN95452.1
Hypothetical protein; COG0358 DNA primase (bacterial type).
 
     0.625
AEN95451.1
Hypothetical protein.
 
     0.563
AEN95448.1
Hypothetical protein.
       0.437
AEN95449.1
Hypothetical protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
       0.436
AEN98195.1
Hypothetical protein; COG1349 Transcriptional regulators of sugar metabolism.
  
    0.423
AEN96560.1
Hypothetical protein.
  
     0.411
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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