Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN95470.1Hypothetical protein; COG1396 Predicted transcriptional regulators. (268 aa)    
Predicted Functional Partners:
AEN95472.1
Hypothetical protein.
  
     0.772
AEN95471.1
Hypothetical protein; COG1349 Transcriptional regulators of sugar metabolism.
  
     0.771
AEN95491.1
Hypothetical protein.
  
     0.767
AEN98189.1
Hypothetical protein.
  
     0.765
AEN98195.1
Hypothetical protein; COG1349 Transcriptional regulators of sugar metabolism.
  
     0.760
AEN95488.1
Putative conjugal transfer protein.
  
    0.757
AEN98194.1
Hypothetical protein.
  
     0.754
AEN95468.1
Hypothetical protein.
  
     0.703
AEN95489.1
COG0358 DNA primase (bacterial type).
  
    0.686
AEN98196.1
Hypothetical protein.
  
     0.661
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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