STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEN95508.1DEAD-like helicase; COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases. (2502 aa)    
Predicted Functional Partners:
AEN95509.1
Hypothetical protein.
 
    0.947
AEN95510.1
Hypothetical protein.
 
   
 0.914
AEN95512.1
Hypothetical protein; COG0841 Cation/multidrug efflux pump.
 
     0.851
AEN95503.1
Hypothetical protein.
 
     0.812
AEN95501.1
Hypothetical protein; COG0334 Glutamate dehydrogenase/leucine dehydrogenase.
 
     0.763
AEN95502.1
Hypothetical protein; COG0358 DNA primase (bacterial type).
 
     0.732
cobB
NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
   
    0.682
AEN95424.1
Hypothetical protein.
 
     0.643
AEN95514.1
Relaxase/mobilization nuclease family protein.
 
     0.640
AEN95425.1
TRAG family protein; COG3505 Type IV secretory pathway, VirD4 components.
 
     0.630
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.