Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEN95529.1COG1396 Predicted transcriptional regulators. (143 aa)    
Predicted Functional Partners:
AEN95528.1
Site-specific recombinase; COG0582 Integrase; Belongs to the 'phage' integrase family.
 
    0.677
AEN95531.1
Hypothetical protein; COG1066 Predicted ATP-dependent serine protease.
 
     0.619
AEN98405.1
Hypothetical protein.
  
     0.558
AEN98403.1
Hypothetical protein; COG0148 Enolase.
  
     0.555
AEN98155.1
Hypothetical protein; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair.
  
     0.542
AEN95530.1
Hypothetical protein.
       0.523
AEN98418.1
Hypothetical protein.
  
     0.506
AEN98412.1
Hypothetical protein; COG3843 Type IV secretory pathway, VirD2 components (relaxase).
  
    0.493
AEN97261.1
Hypothetical protein; COG3867 Arabinogalactan endo-1,4-beta-galactosidase.
  
     0.470
AEN98409.1
Hypothetical protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
     0.467
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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