Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEN95643.1Hypothetical protein; COG5652 Predicted integral membrane protein. (180 aa)    
Predicted Functional Partners:
AEN95642.1
COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
       0.734
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.556
AEN95645.1
Hypothetical protein; COG0060 Isoleucyl-tRNA synthetase.
       0.516
ftsE
Putative ATPase involved in cell division; Part of the ABC transporter FtsEX involved in cellular division.
       0.497
AEN95641.1
Metallopeptidase M23 family protein; COG3883 Uncharacterized protein conserved in bacteria.
       0.492
AEN95640.1
Cell division transport system permease protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.476
AEN97423.1
Hypothetical protein.
  
     0.411
Your Current Organism:
Roseburia hominis
NCBI taxonomy Id: 585394
Other names: R. hominis A2-183, Roseburia hominis A2-183, Roseburia hominis str. A2-183, Roseburia hominis strain A2-183, butyrate-producing bacterium A2-183
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